Methane Research Programme

The NZAGRC methane programme is jointly planned and funded in partnership with the PGgRc and aligns with existing MPI programmes funded through SLMACC and New Zealand funding in support of the Global Research Alliance on agricultural greenhouse gases. It aims to reduce emissions by directly targeting the methane producing methanogens through the discovery of small molecule inhibitors and vaccines and indirectly through feeding and changes in animal phenotype. 


  • Breeding: Research to understand the genetics of host control of ruminant methane emissions, which aims to develop genetic and genomic selection technologies to reduce methane yield and intensity in sheep. The current stage of the programme involves the development and dissemination of practical tools for selection for lowered emissions. A major part of maximising impact and uptake is to explore relative economic value from increased production and potential increased feed utilisation associated with lowered methane
  • Vaccine (jointly supported by PGgRc): A prototype vaccine (which after further development is aimed at producing a vaccine targeted at reducing methane emissions in cattle and sheep by 20%) is being formulated with the help of a commercial partner
  • Inhibitors (previously jointly funded but now fully funded by PGgRc): Research to develop cost-effective inhibitors that reduce methane emissions by at least 20% in sheep and cattle—without reducing productivity—is now being developed, with a view to bring the technology to market
  • Modelling: A tool to help scientists in the NZAGRC/PGgRc programme to develop hypotheses and predict responses in methane formation is in its final stages
Current progress and research stories

The current objectives within the NZAGRC methane programme have made significant progress this year, with the sheep breeding programme getting closer to delivering breeding values to the national flock.

Rumen microbial (meta)genomics and its application to ruminant production

Morgavi, D., Kelly, W., Janssen, P., & Attwood, G. (2013). Rumen microbial (meta)genomics and its application to ruminant production. Animal, 7(S1), 184-201


Meat and milk produced by ruminants are important agricultural products and are major sources of protein for humans. Ruminant production is of considerable economic value and underpins food security in many regions of the world. However, the sector faces major challenges because of diminishing natural resources and ensuing increases in production costs, and also because of the increased awareness of the environmental impact of farming ruminants. The digestion of feed and the production of enteric methane are key functions that could be manipulated by having a thorough understanding of the rumen microbiome. Advances in DNA sequencing technologies and bioinformatics are transforming our understanding of complex microbial ecosystems, including the gastrointestinal tract of mammals. The application of these techniques to the rumen ecosystem has allowed the study of the microbial diversity under different dietary and production conditions. Furthermore, the sequencing of genomes from several cultured rumen bacterial and archaeal species is providing detailed information about their physiology. More recently, metagenomics, mainly aimed at understanding the enzymatic machinery involved in the degradation of plant structural polysaccharides, is starting to produce new insights by allowing access to the total community and sidestepping the limitations imposed by cultivation. These advances highlight the promise of these approaches for characterising the rumen microbial community structure and linking this with the functions of the rumen microbiota. Initial results using high-throughput culture-independent technologies have also shown that the rumen microbiome is far more complex and diverse than the human caecum. Therefore, cataloguing its genes will require a considerable sequencing and bioinformatic effort. Nevertheless, the construction of a rumen microbial gene catalogue through metagenomics and genomic sequencing of key populations is an attainable goal. A rumen microbial gene catalogue is necessary to understand the function of the microbiome and its interaction with the host animal and feeds, and it will provide a basis for integrative microbiome–host models and inform strategies promoting less-polluting, more robust and efficient ruminants.

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